MERS coronavirus: data gaps for laboratory preparedness.
Identifieur interne : 001622 ( Main/Exploration ); précédent : 001621; suivant : 001623MERS coronavirus: data gaps for laboratory preparedness.
Auteurs : Rita De Sousa [Suède] ; Chantal Reusken [Pays-Bas] ; Marion Koopmans [Pays-Bas]Source :
- Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology [ 1873-5967 ] ; 2014.
Descripteurs français
- KwdFr :
- Animaux, Coronaviridae (), Coronaviridae (isolement et purification), Humains, Infections à coronavirus (diagnostic), Infections à coronavirus (virologie), Renforcement des capacités (tendances), Santé mondiale, Syndrome de détresse respiratoire de l'adulte (diagnostic), Syndrome de détresse respiratoire de l'adulte (virologie).
- MESH :
- diagnostic : Infections à coronavirus, Syndrome de détresse respiratoire de l'adulte.
- isolement et purification : Coronaviridae.
- tendances : Renforcement des capacités.
- virologie : Infections à coronavirus, Syndrome de détresse respiratoire de l'adulte.
- Animaux, Coronaviridae, Humains, Santé mondiale.
English descriptors
- KwdEn :
- Animals, Capacity Building (trends), Coronaviridae (classification), Coronaviridae (isolation & purification), Coronavirus Infections (diagnosis), Coronavirus Infections (virology), Global Health, Humans, Respiratory Distress Syndrome, Adult (diagnosis), Respiratory Distress Syndrome, Adult (virology).
- MESH :
- classification : Coronaviridae.
- diagnosis : Coronavirus Infections, Respiratory Distress Syndrome, Adult.
- isolation & purification : Coronaviridae.
- trends : Capacity Building.
- virology : Coronavirus Infections, Respiratory Distress Syndrome, Adult.
- Animals, Global Health, Humans.
Abstract
Since the emergence of Middle East Respiratory Syndrome Coronavirus (MERS-CoV) in 2012, many questions remain on modes of transmission and sources of virus. In outbreak situations, especially with emerging organisms causing severe human disease, it is important to understand the full spectrum of disease, and shedding kinetics in relation to infectivity and the ability to transmit the microorganism. Laboratory response capacity during the early stages of an outbreak focuses on development of virological and immunological methods for patient diagnosis, for contact tracing, and for epidemiological studies into sources, modes of transmission, identification of risk groups, and animal reservoirs. However, optimal use of this core public health laboratory capacity requires a fundamental understanding of kinetics of viral shedding and antibody response, of assay validation and of interpretation of test outcomes. We reviewed available data from MERS-CoV case reports, and compared this with data on kinetics of shedding and immune response from published literature on other human coronaviruses (hCoVs). We identify and discuss important data gaps, and biases that limit the laboratory preparedness to this novel disease. Public health management will benefit from standardised reporting of methods used, details of test outcomes by sample type, sampling date, in relation to symptoms and risk factors, along with the currently reported demographic, clinical and epidemiological findings.
DOI: 10.1016/j.jcv.2013.10.030
PubMed: 24286807
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 001091
- to stream PubMed, to step Curation: 001091
- to stream PubMed, to step Checkpoint: 000F73
- to stream Ncbi, to step Merge: 002789
- to stream Ncbi, to step Curation: 002789
- to stream Ncbi, to step Checkpoint: 002789
- to stream Main, to step Merge: 001627
- to stream Main, to step Curation: 001622
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">MERS coronavirus: data gaps for laboratory preparedness.</title>
<author><name sortKey="De Sousa, Rita" sort="De Sousa, Rita" uniqKey="De Sousa R" first="Rita" last="De Sousa">Rita De Sousa</name>
<affiliation wicri:level="3"><nlm:affiliation>Centre for Infectious Disease Research, Diagnostics and Screening, Division Virology, National Institute for Public Health and the Environment, Bilthoven, The Netherlands; The European Programme for Public Health Microbiology Training (EUPHEM), European Center for Disease Control, Stockholm, Sweden.</nlm:affiliation>
<country xml:lang="fr">Suède</country>
<wicri:regionArea>Centre for Infectious Disease Research, Diagnostics and Screening, Division Virology, National Institute for Public Health and the Environment, Bilthoven, The Netherlands; The European Programme for Public Health Microbiology Training (EUPHEM), European Center for Disease Control, Stockholm</wicri:regionArea>
<placeName><settlement type="city">Stockholm</settlement>
<region nuts="2">Svealand</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Reusken, Chantal" sort="Reusken, Chantal" uniqKey="Reusken C" first="Chantal" last="Reusken">Chantal Reusken</name>
<affiliation wicri:level="3"><nlm:affiliation>Centre for Infectious Disease Research, Diagnostics and Screening, Division Virology, National Institute for Public Health and the Environment, Bilthoven, The Netherlands; Department of Viroscience, Erasmus Medical Centre, Rotterdam, The Netherlands.</nlm:affiliation>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Centre for Infectious Disease Research, Diagnostics and Screening, Division Virology, National Institute for Public Health and the Environment, Bilthoven, The Netherlands; Department of Viroscience, Erasmus Medical Centre, Rotterdam</wicri:regionArea>
<placeName><settlement type="city">Rotterdam</settlement>
<region nuts="2" type="province">Hollande-Méridionale</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Koopmans, Marion" sort="Koopmans, Marion" uniqKey="Koopmans M" first="Marion" last="Koopmans">Marion Koopmans</name>
<affiliation wicri:level="3"><nlm:affiliation>Centre for Infectious Disease Research, Diagnostics and Screening, Division Virology, National Institute for Public Health and the Environment, Bilthoven, The Netherlands; Department of Viroscience, Erasmus Medical Centre, Rotterdam, The Netherlands. Electronic address: marion.koopmans@rivm.nl.</nlm:affiliation>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Centre for Infectious Disease Research, Diagnostics and Screening, Division Virology, National Institute for Public Health and the Environment, Bilthoven, The Netherlands; Department of Viroscience, Erasmus Medical Centre, Rotterdam</wicri:regionArea>
<placeName><settlement type="city">Rotterdam</settlement>
<region nuts="2" type="province">Hollande-Méridionale</region>
</placeName>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2014">2014</date>
<idno type="RBID">pubmed:24286807</idno>
<idno type="pmid">24286807</idno>
<idno type="doi">10.1016/j.jcv.2013.10.030</idno>
<idno type="wicri:Area/PubMed/Corpus">001091</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001091</idno>
<idno type="wicri:Area/PubMed/Curation">001091</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">001091</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000F73</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000F73</idno>
<idno type="wicri:Area/Ncbi/Merge">002789</idno>
<idno type="wicri:Area/Ncbi/Curation">002789</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">002789</idno>
<idno type="wicri:Area/Main/Merge">001627</idno>
<idno type="wicri:Area/Main/Curation">001622</idno>
<idno type="wicri:Area/Main/Exploration">001622</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">MERS coronavirus: data gaps for laboratory preparedness.</title>
<author><name sortKey="De Sousa, Rita" sort="De Sousa, Rita" uniqKey="De Sousa R" first="Rita" last="De Sousa">Rita De Sousa</name>
<affiliation wicri:level="3"><nlm:affiliation>Centre for Infectious Disease Research, Diagnostics and Screening, Division Virology, National Institute for Public Health and the Environment, Bilthoven, The Netherlands; The European Programme for Public Health Microbiology Training (EUPHEM), European Center for Disease Control, Stockholm, Sweden.</nlm:affiliation>
<country xml:lang="fr">Suède</country>
<wicri:regionArea>Centre for Infectious Disease Research, Diagnostics and Screening, Division Virology, National Institute for Public Health and the Environment, Bilthoven, The Netherlands; The European Programme for Public Health Microbiology Training (EUPHEM), European Center for Disease Control, Stockholm</wicri:regionArea>
<placeName><settlement type="city">Stockholm</settlement>
<region nuts="2">Svealand</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Reusken, Chantal" sort="Reusken, Chantal" uniqKey="Reusken C" first="Chantal" last="Reusken">Chantal Reusken</name>
<affiliation wicri:level="3"><nlm:affiliation>Centre for Infectious Disease Research, Diagnostics and Screening, Division Virology, National Institute for Public Health and the Environment, Bilthoven, The Netherlands; Department of Viroscience, Erasmus Medical Centre, Rotterdam, The Netherlands.</nlm:affiliation>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Centre for Infectious Disease Research, Diagnostics and Screening, Division Virology, National Institute for Public Health and the Environment, Bilthoven, The Netherlands; Department of Viroscience, Erasmus Medical Centre, Rotterdam</wicri:regionArea>
<placeName><settlement type="city">Rotterdam</settlement>
<region nuts="2" type="province">Hollande-Méridionale</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Koopmans, Marion" sort="Koopmans, Marion" uniqKey="Koopmans M" first="Marion" last="Koopmans">Marion Koopmans</name>
<affiliation wicri:level="3"><nlm:affiliation>Centre for Infectious Disease Research, Diagnostics and Screening, Division Virology, National Institute for Public Health and the Environment, Bilthoven, The Netherlands; Department of Viroscience, Erasmus Medical Centre, Rotterdam, The Netherlands. Electronic address: marion.koopmans@rivm.nl.</nlm:affiliation>
<country xml:lang="fr">Pays-Bas</country>
<wicri:regionArea>Centre for Infectious Disease Research, Diagnostics and Screening, Division Virology, National Institute for Public Health and the Environment, Bilthoven, The Netherlands; Department of Viroscience, Erasmus Medical Centre, Rotterdam</wicri:regionArea>
<placeName><settlement type="city">Rotterdam</settlement>
<region nuts="2" type="province">Hollande-Méridionale</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology</title>
<idno type="eISSN">1873-5967</idno>
<imprint><date when="2014" type="published">2014</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term>
<term>Capacity Building (trends)</term>
<term>Coronaviridae (classification)</term>
<term>Coronaviridae (isolation & purification)</term>
<term>Coronavirus Infections (diagnosis)</term>
<term>Coronavirus Infections (virology)</term>
<term>Global Health</term>
<term>Humans</term>
<term>Respiratory Distress Syndrome, Adult (diagnosis)</term>
<term>Respiratory Distress Syndrome, Adult (virology)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term>
<term>Coronaviridae ()</term>
<term>Coronaviridae (isolement et purification)</term>
<term>Humains</term>
<term>Infections à coronavirus (diagnostic)</term>
<term>Infections à coronavirus (virologie)</term>
<term>Renforcement des capacités (tendances)</term>
<term>Santé mondiale</term>
<term>Syndrome de détresse respiratoire de l'adulte (diagnostic)</term>
<term>Syndrome de détresse respiratoire de l'adulte (virologie)</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronaviridae</term>
</keywords>
<keywords scheme="MESH" qualifier="diagnosis" xml:lang="en"><term>Coronavirus Infections</term>
<term>Respiratory Distress Syndrome, Adult</term>
</keywords>
<keywords scheme="MESH" qualifier="diagnostic" xml:lang="fr"><term>Infections à coronavirus</term>
<term>Syndrome de détresse respiratoire de l'adulte</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronaviridae</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Coronaviridae</term>
</keywords>
<keywords scheme="MESH" qualifier="tendances" xml:lang="fr"><term>Renforcement des capacités</term>
</keywords>
<keywords scheme="MESH" qualifier="trends" xml:lang="en"><term>Capacity Building</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Infections à coronavirus</term>
<term>Syndrome de détresse respiratoire de l'adulte</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Coronavirus Infections</term>
<term>Respiratory Distress Syndrome, Adult</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Global Health</term>
<term>Humans</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Animaux</term>
<term>Coronaviridae</term>
<term>Humains</term>
<term>Santé mondiale</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Since the emergence of Middle East Respiratory Syndrome Coronavirus (MERS-CoV) in 2012, many questions remain on modes of transmission and sources of virus. In outbreak situations, especially with emerging organisms causing severe human disease, it is important to understand the full spectrum of disease, and shedding kinetics in relation to infectivity and the ability to transmit the microorganism. Laboratory response capacity during the early stages of an outbreak focuses on development of virological and immunological methods for patient diagnosis, for contact tracing, and for epidemiological studies into sources, modes of transmission, identification of risk groups, and animal reservoirs. However, optimal use of this core public health laboratory capacity requires a fundamental understanding of kinetics of viral shedding and antibody response, of assay validation and of interpretation of test outcomes. We reviewed available data from MERS-CoV case reports, and compared this with data on kinetics of shedding and immune response from published literature on other human coronaviruses (hCoVs). We identify and discuss important data gaps, and biases that limit the laboratory preparedness to this novel disease. Public health management will benefit from standardised reporting of methods used, details of test outcomes by sample type, sampling date, in relation to symptoms and risk factors, along with the currently reported demographic, clinical and epidemiological findings. </div>
</front>
</TEI>
<affiliations><list><country><li>Pays-Bas</li>
<li>Suède</li>
</country>
<region><li>Hollande-Méridionale</li>
<li>Svealand</li>
</region>
<settlement><li>Rotterdam</li>
<li>Stockholm</li>
</settlement>
</list>
<tree><country name="Suède"><region name="Svealand"><name sortKey="De Sousa, Rita" sort="De Sousa, Rita" uniqKey="De Sousa R" first="Rita" last="De Sousa">Rita De Sousa</name>
</region>
</country>
<country name="Pays-Bas"><region name="Hollande-Méridionale"><name sortKey="Reusken, Chantal" sort="Reusken, Chantal" uniqKey="Reusken C" first="Chantal" last="Reusken">Chantal Reusken</name>
</region>
<name sortKey="Koopmans, Marion" sort="Koopmans, Marion" uniqKey="Koopmans M" first="Marion" last="Koopmans">Marion Koopmans</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001622 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001622 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= SrasV1 |flux= Main |étape= Exploration |type= RBID |clé= pubmed:24286807 |texte= MERS coronavirus: data gaps for laboratory preparedness. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:24286807" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a SrasV1
This area was generated with Dilib version V0.6.33. |